Glyma06g10540 - SoyBase

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Report for Sequence Feature Glyma06g10540

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7971755
stop:	7985816
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G09020	AT	Annotation by Michelle Graham. TAIR10: isoamylase 3 \| chr4:5784099-5788839 FORWARD LENGTH=764	SoyBase	E_val: 0	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0005983	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch catabolic process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009569	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast starch grain	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004556	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-amylase activity	SoyBase	N/A	ISS
GO:0019156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isoamylase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0470	KOG	1,4-alpha-glucan branching enzyme/starch branching enzyme II	JGI		ISS
PTHR10357	Panther	AMYLASE	JGI		ISS
PTHR10357:SF75	Panther	ALPHA-AMLYASE	JGI		ISS
PF00128	PFAM	Alpha amylase, catalytic domain	JGI		ISS
PF02922	PFAM	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)	JGI		ISS
UniRef100_A4PIT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoamylase-type starch-debranching enzyme 3 n=1 Tax=Phaseolus vulgaris RepID=A4PIT0_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A787	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A787 related cluster n=1 Tax=unknown RepID=UPI000233A787	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10540

Paralog	Evidence	Comments
Glyma04g10693	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g100600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10540

Limit To All Plant Sequences

>Glyma06g10540.2   sequence type=CDS   gene model=Glyma06g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCCATCAGTTCACACTCTTCGCTCCGATTTTTTCCGGCGGAAACAACGCCGGCCGTTGCTCGTTTGCCGGAAATTCGTCCGTCCGTGACGTGAGGTCGTTGAGGTTTATGAAGCAAGCATCGGGAAGACAATCGAACAATGAACATGGTGTTTTTAGCGAGACAATGGATCGTGCCAAGCATAGGGCAACTACTGCTTATGGTGGTCGTGCTCAAGAAGGTGTTCTCGAGGAAGAATCCTCCAAGGTGATAGAGAGCAGACCATCATGGAAAGCTTTTCCAGGCCAGTCATTTCCATTGGGGGTATCAGAAGTTGACAGTGGCATCAATTTTGCTATTTTTTCACAAAATGCAACTGCTGTCACACTTTGTTTAGTCCTTCCTGAGAGGGGAAGCATTGACGCATTGGATGGTGGCATGATAGAAATGGTTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCACGAAGCAATGTTCTGTATGGATATCGCATAGATGGACCTCGAGACTGGGGTAAGGGGCATCGATTTGATAGCAGCATTGTGCTTGTCGATCCTTATGCGAAACTAGTTGAAGGTCGAAGATATTTCGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTTGACTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAAGTGATGAATCTAGTGGTTTGGATAGCAACATTCGTGGCAGCTACCTCGGTATGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAGTTGCTGCCTGTCTTTGAGTTTGATGAGTTAGAATTCCAGAGGCGTCCAAATCCCAGAGATCACATGATTAATACATGGGGTTATTCGACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCCGAGAGTTCAAGCAAATGGTTAAATCCTTACATTCTGCTGGTATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGCCTTTCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAATCATCCTGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACACTGGGTCACCGAATACCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTGTGTCGAGGAATTGATGGCTCCCCCCTCAATGCACCCCCACTTATTAGGGCTATTGCTAAAGATGCAGTATTATCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGTCTCTATCTTGTTGGGAGTTTTCCTAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTCTGGTGTGAAGGGGAGCTTTGCAACTCGTGTAGCTGGGTCTTCTGATCTTTACAGTGTGAACAATCGTAGGCCATATCATGGTATTAACTTTGTTATTGCACATGACGGATTCACCTTGCGTGATCTTGTTTCATACAATTTCAAGCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAGGGGAAACTGATGATGCTAGTGTAAGAGCTTTGCGATCACGGCAAATGAAAAACTTCCATTTGGCATTAATGATATCTCAGGGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTGTGGGATCAGTTGGATGCACGGAAGAGTGATCACTTCCGGTTTTTCTCAAACATGATAAAGTACAGGCATGCACATGAAGTATTCAATCATGAAAGTTTTCTCAGCAAGAACGACATAACATGGCATGAAGACAATTGGGACAATCATGACAGCAAATTTCTTGCATTCACGCTTCATGACAAGAGCGGGGGAGATATCTATTTGGCATTTAATGCTCACGATTACTTTGTCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTAACGTAGGAAACACGTACAATATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTTTTGA

Predicted protein sequences of Glyma06g10540

Limit To All Plant Sequences

>Glyma06g10540.2   sequence type=predicted peptide   gene model=Glyma06g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHQFTLFAPIFSGGNNAGRCSFAGNSSVRDVRSLRFMKQASGRQSNNEHGVFSETMDRAKHRATTAYGGRAQEGVLEEESSKVIESRPSWKAFPGQSFPLGVSEVDSGINFAIFSQNATAVTLCLVLPERGSIDALDGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPRDWGKGHRFDSSIVLVDPYAKLVEGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTSDESSGLDSNIRGSYLGMIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGSVNASREFKQMVKSLHSAGIEVILDVVYNHTNEADDAFPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSGVKGSFATRVAGSSDLYSVNNRRPYHGINFVIAHDGFTLRDLVSYNFKHNEANGEGGNDGSNDNFSWNCGLEGETDDASVRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSNMIKYRHAHEVFNHESFLSKNDITWHEDNWDNHDSKFLAFTLHDKSGGDIYLAFNAHDYFVKVLLPAPPKKRNWFRVVDTNLKSPDDFVLDGVPNVGNTYNIAPYSSILLEAKF*

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